dipy_mask¶
Synopsis¶
Workflow for creating a binary mask
Usage¶
dipy_mask [OPTIONS] input_files lb
Input Parameters¶
input_files
Path to image to be masked.
lb
Lower bound value.
General Options¶
--ub
Upper bound value. (default: inf)
Output Options¶
--out_dir
Output directory. (default: current directory)
--out_mask
Name of the masked file. (default: mask.nii.gz)
References¶
Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.