dipy_apply_transform¶
Usage¶
dipy_apply_transform [OPTIONS] static_image_files moving_image_files transform_map_file
Input Parameters¶
static_image_files
Path of the static image file.
moving_image_files
Path of the moving image(s). It can be a single image or a folder containing multiple images.
transform_map_file
For the affine case, it should be a text(
*.txt
) file containing the affine matrix. For the diffeomorphic case, it should be a nifti file containing the mapping displacement field in each voxel with this shape (x, y, z, 3, 2).
General Options¶
--transform_type
Select the transformation type to apply between ‘affine’ or ‘diffeomorphic’. (default: affine)
Output Options¶
--out_dir
Directory to save the transformed files. (default: current directory)
--out_file
Name of the transformed file. It is recommended to use the flag –mix-names to prevent the output files from being overwritten. (default: transformed.nii.gz)
References¶
Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.